PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000065.1_g00033.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 474aa    MW: 53961.8 Da    PI: 4.8959
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000065.1_g00033.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.75.8e-33561951128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr 76 
                              lp+G++F+P+d+e++++ L+ kv  ++      ++  e+i++v+    i++++P++Lp  vk++ +  +fF+++ k+y+tg+rk+r
  Itr_sc000065.1_g00033.1  56 LPRGVKFDPSDQEIIWHLLA-KVGLNDlkshpfID--EFIPTVNeddgICYTHPQNLP-GVKQDGTVSHFFHRAIKAYNTGTRKRR 137
                              799************66555.55555534543322..23444423345**********.677888999****************** PP

                      NAM  77 atk.....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                              +++     + +W++tg++k+v+  +g + g+kk++v+y  +++  k+ekt+Wvmh+y+l
  Itr_sc000065.1_g00033.1 138 KIHgdnfgDVRWHKTGRTKPVVL-DGIQRGCKKIMVLYvsSAKGGKAEKTNWVMHQYHL 195
                              86555555888************.99************6545666778*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-3941214IPR003441NAC domain
PROSITE profilePS5100530.93956214IPR003441NAC domain
PfamPF023651.4E-1357195IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000077Biological ProcessDNA damage checkpoint
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010332Biological Processresponse to gamma radiation
GO:0040020Biological Processregulation of meiotic nuclear division
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MARPSWLVDS KRIATKIRSA SDDPGNINWK SNPTRTCPSC HYIIDNHDET HEWPGLPRGV  60
KFDPSDQEII WHLLAKVGLN DLKSHPFIDE FIPTVNEDDG ICYTHPQNLP GVKQDGTVSH  120
FFHRAIKAYN TGTRKRRKIH GDNFGDVRWH KTGRTKPVVL DGIQRGCKKI MVLYVSSAKG  180
GKAEKTNWVM HQYHLGTGED EREGEYVVSK VFYQQQQVKH SEKNELESPE ETECLDAKKD  240
PSTPKTVTPE PLHTETRPSS FVAGLETPIP YISSNIQHRE VEYTEADMEI PLEKADNQVE  300
ITQNQTEQME LQNENEAGEE RKWWDSESQN LLDSQQLVEG LSLCDELLQS QSPSRDGDQN  360
GKEHKSTSCL SDYRHLGPEN FKKDLEECQE LVLDLPPTNQ SGKEKKCMPH LSDYGHLGTE  420
NFKLLENNQD LVLDPENIML DTPPDFRLSQ LEFASQDSYI AWGGNNIDST EQGS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016548188.10.0PREDICTED: NAC domain-containing protein 8 isoform X1
SwissprotQ6NQK21e-172NAC8_ARATH; NAC domain-containing protein 8
TrEMBLM0ZJN30.0M0ZJN3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000021220.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA81622430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.11e-173NAC family protein